Command line: [exonerate -m p2g --showtargetgff -q sw/selw_tetrahymena_thermophila.fa -t fastasubseq_sw/hit3.selw_tetrahymena_thermophila.I.multifiliis_strain_G5/hit3]
Hostname: [luke]

C4 Alignment:
------------
         Query: selw_tetrahymena_thermophila
        Target: gi|340508766|gb|GL983129.1|:subseq(0,30000) Ichthyophthirius multifiliis unplaced genomic scaffold scaff_1120509249573, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 115
   Query range: 16 -> 65
  Target range: 1450 -> 1303

   17 : PheGlnValLeuIleGluTyrCysGlySerUnkGlyTyrGlnAsnMetPheAspTyrAlaLy :   37
        .!!:!!|||:!!:!!|||||||||||||||   ||||||:!!  !  !|||:!! !!  !..
        IleLysValMetValGluTyrCysGlySer***GlyTyrLysProSerPheAsnAsnLeuSe
 1450 : ATTAAAGTAATGGTTGAATATTGTGGTAGTTGAGGATATAAACCTTCGTTCAATAATTTATC : 1390

   38 : sLysCysIleGluGlnIleTyrProSerAlaThrValValGlyLysGlnIleAlaGlyTyrT :   58
        .!!.! !|||:!!.!.   !:! !!! !  !..!:!!! !||||||   ||||||||| !!|
        rAsnSerIleLysAsnSerPheSer***IleValIleGluGlyLysAlaIleAlaGlyAsnT
 1389 : TAATTCTATAAAGAACTCGTTCTCTTAGATAGTTATTGAAGGTAAAGCTATTGCTGGAAATA : 1327

   59 : hrGlyCysPheAspIleTyrVal :   65
        |||||||||||!!::!!|||:!!
        hrGlyCysPheGluValTyrIle
 1326 : CAGGATGTTTTGAAGTTTATATT : 1304

vulgar: selw_tetrahymena_thermophila 16 65 . gi|340508766|gb|GL983129.1|:subseq(0,30000) 1450 1303 - 115 M 49 147
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-01-02
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|340508766|gb|GL983129.1|:subseq(0,30000)	exonerate:protein2genome:local	gene	1304	1450	115	-	.	gene_id 1 ; sequence selw_tetrahymena_thermophila ; gene_orientation .
gi|340508766|gb|GL983129.1|:subseq(0,30000)	exonerate:protein2genome:local	cds	1304	1450	.	-	.	
gi|340508766|gb|GL983129.1|:subseq(0,30000)	exonerate:protein2genome:local	exon	1304	1450	.	-	.	insertions 0 ; deletions 0
gi|340508766|gb|GL983129.1|:subseq(0,30000)	exonerate:protein2genome:local	similarity	1304	1450	115	-	.	alignment_id 1 ; Query selw_tetrahymena_thermophila ; Align 1451 17 147
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis